ccdmb.github.io

CCDM bioinformatics

We are a group of bioinfomaticians working in the Centre for Crop and Disease Management in Perth. This is where we share some of our work, software and pipelines, with each other and the world.

Topics

A list of repositories organised by topic. If you add a new repository to the organisation, please add it here. Note that many of these repositories will be forked from original owners, so may not contain the most recent versions.

Genome assembly

Sequencing QC

Genome alignment and variant detection

Phylogenetics and phylogeography

Genome annotation

Protein functional annotation

Metabolomics

Structural biology